Stem-loop sequence chi-mir-222

Accession

MI0030697 (change log)

Description

Capra hircus miR-222 stem-loop

Gene family

MIPF0000051; mir-221

Literature search

5 open access papers mention chi-mir-222
(16 sentences)

Stem-loop

   cagcugcu  aau ugu    a  c   au              -     auc   ucuu 
5'         gg   g   aggu cc uca  ggcucaguagccag uguag   cug    u
           ||   |   |||| || |||  |||||||||||||| |||||   |||    u
3'         cc   c   ucua gg agu  cugggucaucgguc acauc   gac    g
   -------u  -au --u    c  u   cu              u     gau   uaau 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chrX: 93117133-93117244 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-mir-222

• chi-mir-222: chrX: 93117133-93117244 [+]
• chi-mir-221: chrX: 93117822-93117931 [+]

Database links

• miRBase Tracker:MI0030697

Mature sequence chi-miR-222-3p

• Accession: MIMAT0036070
• Sequence: 71 - agcuacaucuggcuacugggucuc - 94
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).