miRBase entry: chi-mir-222

Stem-loop chi-mir-222


Accession
MI0030697
Description
Capra hircus chi-mir-222 precursor miRNA
Gene family
MIPF0000051; mir-221

Literature search
5 open access papers mention chi-mir-222
(16 sentences)

Sequence

cagcugcuggaauguguagguacccucaauggcucaguagccaguguagauccugucuuuuguaaucaguAGCUACAUCUGGCUACUGGGUCUCugauggcaucuucuaccu
.(.((((........)))).).((.(((..(((((((((((((((((((...(((...........)))...))))).))))))))))))))..))).))............

Structure
cagcugcuggaauguguaggua  c   au              -     auc   ucuu 
                      cc uca  ggcucaguagccag uguag   cug    u
                      || |||  |||||||||||||| |||||   |||    u
                      gg agu  CUGGGUCAUCGGUC ACAUC   gac    g
----------uccaucuucuac  u   CU              U     GAu   uaau 


Annotation confidence Not enough data
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Genome context
chrX: 93117133-93117244 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-222
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-222-3p

Accession MIMAT0036070
Description Capra hircus chi-miR-222-3p mature miRNA
Sequence 71 - AGCUACAUCUGGCUACUGGGUCUC - 94
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40