Stem-loop sequence chi-mir-29b

Accession

MI0030727 (change log)

Description

Capra hircus miR-29b stem-loop

Gene family

MIPF0000009; mir-29

Literature search

6 open access papers mention chi-mir-29b
(17 sentences)

Stem-loop

   ---         -          c      g  u    uuuucc 
5'    cuucuggaa gcugguuuca auggug cu agau      a
      ||||||||| |||||||||| |||||| || ||||       
3'    gaggauuuu ugacuaaagu uaccac ga ucua      u
   aau         g          u      -  -    uguuuc 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (CHIR_2.0; GCA_000317765.2)	Overlapping transcripts
chr16: 77238818-77238901 [+]	intergenic
chr16: 77240318-77240401 [+]	intergenic

Clustered miRNAs

< 10kb from chi-mir-29b

• chi-mir-29b: chr16: 77238818-77238901 [+]
• chi-mir-29b: chr16: 77240318-77240401 [+]
• chi-mir-29c: chr16: 77240814-77240927 [+]
• chi-mir-29c: chr16: 77335341-77335454 [+]

Database links

• miRBase Tracker:MI0030727

Mature sequence chi-miR-29b-5p

• Accession: MIMAT0036114
• Sequence: 11 - cugguuucacaugguggcuuaga - 33
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-29b-3p

• Accession: MIMAT0036115
• Sequence: 52 - uagcaccauuugaaaucagu - 71
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).