Stem-loop sequence chi-mir-29c

Accession

MI0030728 (change log)

Description

Capra hircus miR-29c stem-loop

Gene family

MIPF0000009; mir-29

Literature search

8 open access papers mention chi-mir-29c
(17 sentences)

Stem-loop

   gagcaucaccggaccca         -  ggc           ucc       ---     u 
5'                  ucucuuaca ca   ugaccgauuuc   ugguguu   cagag c
                    ||||||||| ||   |||||||||||   |||||||   ||||| u
3'                  gggggaugu gu   auugguuaaag   accacga   guuuu g
   ------gacgacgaaag         a  ---           uuu       ucu     u 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (CHIR_2.0; GCA_000317765.2)	Overlapping transcripts
chr16: 77240814-77240927 [+]	intergenic
chr16: 77335341-77335454 [+]	intergenic

Clustered miRNAs

< 10kb from chi-mir-29c

• chi-mir-29b: chr16: 77238818-77238901 [+]
• chi-mir-29b: chr16: 77240318-77240401 [+]
• chi-mir-29c: chr16: 77240814-77240927 [+]
• chi-mir-29c: chr16: 77335341-77335454 [+]

Database links

• miRBase Tracker:MI0030728

Mature sequence chi-miR-29c-5p

• Accession: MIMAT0036116
• Sequence: 32 - ugaccgauuucuccugguguuca - 54
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-29c-3p

• Accession: MIMAT0036117
• Sequence: 70 - uagcaccauuugaaauugguu - 90
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).