Stem-loop chi-mir-29c

Accession

MI0030728

Description

Capra hircus chi-mir-29c precursor miRNA

Gene family

MIPF0000009; mir-29

Literature search

8 open access papers mention chi-mir-29c
(17 sentences)

Sequence

gagcaucaccggacccaucucuuacacaggcUGACCGAUUUCUCCUGGUGUUCAgagucuguuuuugucUAGCACCAUUUGAAAUUGGUUaugauguaggggggaaagcagcag
..............((..((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).))))))))))..........

Structure

gagcaucaccggac  au        -  ggc           UCC       C   gucu 
              cc  cucuuaca ca   UGACCGAUUUC   UGGUGUU Aga    g
              ||  |||||||| ||   |||||||||||   ||||||| |||    u
              gg  ggggaugu gu   aUUGGUUAAAG   ACCACGA Ucu    u
----gacgacgaaa  --        a  ---           UUU       -   guuu 

Annotation confidence Not enough data

Genome context

chr16: 77240814-77240927 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-29c

Mature chi-miR-29c-5p

• Accession: MIMAT0036116
• Description: Capra hircus chi-miR-29c-5p mature miRNA
• Sequence: 32 - UGACCGAUUUCUCCUGGUGUUCA - 54
• Evidence: experimental ; Illumina [1]

Mature chi-miR-29c-3p

• Accession: MIMAT0036117
• Description: Capra hircus chi-miR-29c-3p mature miRNA
• Sequence: 70 - UAGCACCAUUUGAAAUUGGUU - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40