Stem-loop sequence chi-mir-30c

Accession

MI0030733 (change log)

Description

Capra hircus miR-30c stem-loop

Gene family

MIPF0000005; mir-30

Literature search

5 open access papers mention chi-mir-30c
(10 sentences)

Stem-loop

   ca   u  -aa     cc    ugu u       u   aca        ug gag 
5'   gac gu   ccaug  guag   g guaaaca ccu   cucucagc  u   c
     ||| ||   |||||  ||||   | ||||||| |||   ||||||||  |   u
3'   cug ca   gguac  cguc   c cauuugu ggg   gagggucg  g   c
   --   -  aaa     --    uuc u       u   --a        gu gag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chr3: 107744025-107744129 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-mir-30c

• chi-mir-30e: chr3: 107747145-107747250 [-]
• chi-mir-30c: chr3: 107744025-107744129 [-]

Database links

• miRBase Tracker:MI0030733

Mature sequence chi-miR-30c-5p

• Accession: MIMAT0036125
• Sequence: 26 - uguaaacauccuacacucucagc - 48
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-30c-3p

• Accession: MIMAT0036126
• Sequence: 65 - cugggagaggguuguuuacuc - 85
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).