miRBase entry: chi-mir-30c

Stem-loop chi-mir-30c


Accession
MI0030733
Description
Capra hircus chi-mir-30c precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
5 open access papers mention chi-mir-30c
(10 sentences)

Sequence

cagacuguaaccaugccguagugugUGUAAACAUCCUACACUCUCAGCugugagcucgagguggCUGGGAGAGGGUUGUUUACUCcuucugccauggaaaacguc
..(((.((..(((((..((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...)))))))))...)))))

Structure
ca   u  -aa     cc    ugu U       U   ACA         guga   c 
  gac gu   ccaug  guag   g GUAAACA CCU   CUCUCAGCu    gcu  
  ||| ||   |||||  ||||   | ||||||| |||   |||||||||    ||| g
  cug ca   gguac  cguc   C CAUUUGU GGG   GAGGGUCgg    ugg  
--   -  aaa     --    uuc U       U   --A         ----   a 


Annotation confidence Not enough data
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Genome context
chr3: 107744025-107744129 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-30c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-30c-5p

Accession MIMAT0036125
Description Capra hircus chi-miR-30c-5p mature miRNA
Sequence 26 - UGUAAACAUCCUACACUCUCAGC - 48
Evidence experimental
Illumina [1]

Mature chi-miR-30c-3p

Accession MIMAT0036126
Description Capra hircus chi-miR-30c-3p mature miRNA
Sequence 65 - CUGGGAGAGGGUUGUUUACUC - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40