Stem-loop sequence chi-mir-30d

Accession

MI0030734 (change log)

Description

Capra hircus miR-30d stem-loop

Gene family

MIPF0000005; mir-30

Literature search

7 open access papers mention chi-mir-30d
(14 sentences)

Stem-loop

   a    u  u  u         ccc           guucca 
5'  aguc gu gu guaaacauc   gacuggaagcu      c
    |||| || || |||||||||   |||||||||||       
3'  ucgg ca cg cguuuguag   cugacuuucga      a
   -    c  u  u         --a           aucgac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chr14: 17697089-17697169 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-mir-30d

• chi-mir-30d: chr14: 17697089-17697169 [+]
• chi-mir-30b: chr14: 17702995-17703083 [+]

Database links

• miRBase Tracker:MI0030734

Mature sequence chi-miR-30d-3p

• Accession: MIMAT0036127
• Sequence: 53 - uuucagucagauguuugcugc - 73
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).