Stem-loop chi-mir-30e

Accession

MI0030735

Description

Capra hircus chi-mir-30e precursor miRNA

Literature search

31 open access papers mention chi-mir-30e
(179 sentences)

Sequence

6319940 reads, 18946.0 reads per million, 36 experiments

uucugggcagucuuugcuacUGUAAACAUCCUUGACUGGAAGCUguaaggcguugcaaggagCUUUCAGUCGGAUGUUUACAGCggcaggcugccacggucauccc
..(((((((((((..(((.((((((((((((..(((((((((((.....((...))....))))))))))))))))))))))).))))))))))).))).......

Structure

-----uu   -        uu   a            UU           guaag  g 
       cug ggcagucu  gcu cUGUAAACAUCC  GACUGGAAGCU     gc  
       ||| ||||||||  ||| ||||||||||||  |||||||||||     || u
       ggc ccgucgga  cgg GACAUUUGUAGG  CUGACUUUCga     cg  
cccuacu   a        --   C            --           -ggaa  u 

Annotation confidence High

Genome context

chr3: 107747145-107747250 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-30e

Mature chi-miR-30e-5p

• Accession: MIMAT0036128
• Description: Capra hircus chi-miR-30e-5p mature miRNA
• Sequence: 21 - UGUAAACAUCCUUGACUGGAAGCU - 44
• Evidence: experimental ; Illumina [1]

Mature chi-miR-30e-3p

• Accession: MIMAT0036129
• Description: Capra hircus chi-miR-30e-3p mature miRNA
• Sequence: 63 - CUUUCAGUCGGAUGUUUACAGC - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40