miRBase entry: chi-mir-323a

Stem-loop chi-mir-323a


Accession
MI0030738
Description
Capra hircus chi-mir-323a precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
1 open access papers mention chi-mir-323a
(1 sentences)

Sequence

ggugucagcacugcugcugcuugguacuuggagagaggugguccguggcgcguucgcuuuauuuauggcgCACAUUACACGGUCGACCUCUuugcgguaucuaaucccgccuug
((((.(((((....)))))...((((((.(.((((((((.(.(((((..(.((.((((........)))).)).)..))))).).)))))))).)))))))......))))...

Structure
---    ucagcacugcugcugcuu      u g        g u     gc c  u    uua 
   ggug                  gguacu g agagaggu g ccgug  g gu cgcu   u
   ||||                  |||||| | |||||||| | |||||  | || ||||    
   ccgc                  cuaugg c uuUCUCCA C GGCAC  U CA gcgg   u
guu    ------------ccuaau      - g        G U     AU A  C    uau 


Annotation confidence Not enough data
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Genome context
chr21: 67104063-67104176 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from chi-mir-323a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-323a-3p

Accession MIMAT0036133
Description Capra hircus chi-miR-323a-3p mature miRNA
Sequence 71 - CACAUUACACGGUCGACCUCU - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40