Stem-loop chi-mir-340

Accession

MI0030751

Description

Capra hircus chi-mir-340 precursor miRNA

Gene family

MIPF0000191; mir-340

Literature search

1 open access papers mention chi-mir-340
(1 sentences)

Sequence

guuuguaccuggugugaUUAUAAAGCAAUGAGACUGAUUgucaugugucguuugugggaUCCGUCUCAGUUACUUUAUAGCcauaccugguaucuuauaccacaga
....(((((.((((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).)))))).))))).............

Structure

---------guuu     u      a        -CAA      U    g     ug 
             guacc ggugug UUAUAAAG    UGAGAC GAUU ucaug  u
             ||||| |||||| ||||||||    |||||| |||| |||||  c
             uaugg ccauac GAUAUUUC    ACUCUG CUag ggugu  g
agacaccauauuc     u      C        AUUG      C    -     uu 

Annotation confidence Not enough data

Genome context

chr7: 899623-899728 [+]

Mature chi-miR-340-5p

• Accession: MIMAT0036155
• Description: Capra hircus chi-miR-340-5p mature miRNA
• Sequence: 18 - UUAUAAAGCAAUGAGACUGAUU - 39
• Evidence: experimental ; Illumina [1]

Mature chi-miR-340-3p

• Accession: MIMAT0036156
• Description: Capra hircus chi-miR-340-3p mature miRNA
• Sequence: 60 - UCCGUCUCAGUUACUUUAUAGC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40