miRBase entry: chi-mir-342

Stem-loop chi-mir-342


Accession
MI0030752
Description
Capra hircus chi-mir-342 precursor miRNA
Gene family
MIPF0000190; mir-342

Literature search
1 open access papers mention chi-mir-342
(2 sentences)

Sequence

cgaggcgAGGGGUGCUAUCUGUGGUUGAGGacacggcaaauggaacugUCUCACACAGAAAUCGCACCCAucuccucggccc
(((((.((.((((((..((((((..((((.(((.(..........))))))))))))))....)))))).)).)))))....

Structure
----     c  G      --UA      GU    G   c gcaa 
    cgagg gA GGGUGC    UCUGUG  UGAG aca g    a
    ||||| || ||||||    ||||||  |||| ||| |     
    gcucc cu CCCACG    AGACAC  ACUC Ugu c    u
cccg     u  A      CUAA      --    -   - aagg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr21: 66158564-66158645 [+]

Database links

Mature chi-miR-342-5p

Accession MIMAT0036157
Description Capra hircus chi-miR-342-5p mature miRNA
Sequence 8 - AGGGGUGCUAUCUGUGGUUGAGG - 30
Evidence experimental
Illumina [1]

Mature chi-miR-342-3p

Accession MIMAT0036158
Description Capra hircus chi-miR-342-3p mature miRNA
Sequence 49 - UCUCACACAGAAAUCGCACCCA - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40