Stem-loop sequence chi-mir-379

Accession

MI0030774 (change log)

Description

Capra hircus miR-379 stem-loop

Gene family

MIPF0000126; mir-379

Literature search

4 open access papers mention chi-mir-379
(13 sentences)

Stem-loop

   ccugauucuggggucagca  a    ----    -----uuc   c    a    a       ga       - u ugu 
5'                    cc cucc    acgg        cug agag uggu gacuaug  acguagg c g   g
                      || ||||    ||||        ||| |||| |||| |||||||  ||||||| | |    
3'                    gg gagg    ugcc        gac ucuc auca cugguac  uguaucc g c   a
   ------------------c  -    cucc    uaaccuau   -    a    c       aa       a u uuu 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chr21: 67100421-67100550 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-mir-379

• chi-mir-379: chr21: 67100421-67100550 [+]
• chi-mir-411a: chr21: 67101691-67101817 [+]
• chi-mir-380: chr21: 67103397-67103499 [+]
• chi-mir-411b: chr21: 67103557-67103658 [+]
• chi-mir-1197: chr21: 67103896-67104024 [+]
• chi-mir-323a: chr21: 67104063-67104176 [+]
• chi-mir-758: chr21: 67104376-67104476 [+]
• chi-mir-329b: chr21: 67105074-67105197 [+]
• chi-mir-329a: chr21: 67105386-67105492 [+]
• chi-mir-494: chr21: 67108251-67108363 [+]

Database links

• miRBase Tracker:MI0030774

Mature sequence chi-miR-379-5p

• Accession: MIMAT0036195
• Sequence: 43 - ugguagacuauggaacguagg - 63
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-379-3p

• Accession: MIMAT0036196
• Sequence: 81 - uauguaacaugguccacuaac - 101
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).