miRBase entry: chi-mir-3958

Stem-loop chi-mir-3958


Accession
MI0030780
Description
Capra hircus chi-mir-3958 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
1 open access papers mention chi-mir-3958
(2 sentences)

Sequence

cuGGUCUGAGAUGUUCGAAAGGagguuguccgugauguauuugcuuuauuuguggcAGAUAUUGCACGGUUGAUCUCUuuucuucaucaaaugccuucuugaag
..(((.(..((((...(((((((((((..(((((..(((((((((........)))))))))..)))))..)))))))))))..))))..).))).........

Structure
-------cu   C GA    UUC           gu     au         uua 
         GGU U  GAUG   GAAAGGagguu  ccgug  guauuugcu   u
         ||| |  ||||   |||||||||||  |||||  |||||||||    
         ccg a  cuac   cuuuUCUCUAG  GGCAC  UAUAGAcgg   u
gaaguucuu   u aa    -uu           UU     GU         ugu 


Annotation confidence Not enough data
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Genome context
chr21: 67113857-67113960 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from chi-mir-3958
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-3958-5p

Accession MIMAT0036205
Description Capra hircus chi-miR-3958-5p mature miRNA
Sequence 3 - GGUCUGAGAUGUUCGAAAGG - 22
Evidence experimental
Illumina [1]

Mature chi-miR-3958-3p

Accession MIMAT0036206
Description Capra hircus chi-miR-3958-3p mature miRNA
Sequence 57 - AGAUAUUGCACGGUUGAUCUCU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40