Stem-loop chi-mir-409

Accession

MI0030782

Description

Capra hircus chi-mir-409 precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

2 open access papers mention chi-mir-409
(15 sentences)

Sequence

ccucuccaugguacgcggggagAGGUUACCCGAGCAACUUUGCAUcuggacgacGAAUGUUGCUCGGUGAACCCCuuuucgguaucaaaauccaucagagaggccaucugggag
((((((..((((((.(((((((.((((..((((((((((((((........).)))).)))))))))..)))).)))))))))))))..........))))))((....))...

Structure

-----------      --------ca      g       A    AC         -    - AUc 
           ccucuc          ugguac cggggag GGUU  CCGAGCAAC UUUG C   u
           ||||||          |||||| ||||||| ||||  ||||||||| |||| |    
           ggagag          acuaug gcuuuuC CCAA  GGCUCGUUG AAGc g   g
gagggucuacc      acuaccuaaa      -       C    GU         U    a cag 

Annotation confidence Not enough data

Genome context

chr21: 67142870-67142983 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from chi-mir-409

Mature chi-miR-409-5p

• Accession: MIMAT0036209
• Description: Capra hircus chi-miR-409-5p mature miRNA
• Sequence: 23 - AGGUUACCCGAGCAACUUUGCAU - 45
• Evidence: experimental ; Illumina [1]

Mature chi-miR-409-3p

• Accession: MIMAT0036210
• Description: Capra hircus chi-miR-409-3p mature miRNA
• Sequence: 55 - GAAUGUUGCUCGGUGAACCCC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40