Stem-loop sequence chi-mir-432

Accession

MI0030792 (change log)

Description

Capra hircus miR-432 stem-loop

Gene family

MIPF0000211; mir-432

Literature search

3 open access papers mention chi-mir-432
(10 sentences)

Stem-loop

   gcaugacuccu     u u     ua       g     a   uu   uu 
5'            ccaag c uggag  ggucauu ggugg ucc  uau  c
              ||||| | |||||  ||||||| ||||| |||  |||   
3'            gguuc g accuc  ucgguag ucacc ggg  gua  c
   ---------gc     u u     -c       g     -   -u   uc 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chr21: 66966894-66966983 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-mir-432

• chi-mir-433: chr21: 66962261-66962390 [+]
• chi-mir-433: chr21: 66964297-66964426 [+]
• chi-mir-127: chr21: 66965394-66965510 [+]
• chi-mir-432: chr21: 66966894-66966983 [+]
• chi-mir-136: chr21: 66967078-66967169 [+]

Database links

• miRBase Tracker:MI0030792

Mature sequence chi-miR-432-5p

• Accession: MIMAT0036227
• Sequence: 17 - ucuuggaguaggucauugggugg - 39
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-432-3p

• Accession: MIMAT0036228
• Sequence: 64 - acuggauggcuccuccaugucu - 85
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).