miRBase entry: chi-mir-449b

Stem-loop chi-mir-449b


Accession
MI0030795
Description
Capra hircus chi-mir-449b precursor miRNA
Gene family
MIPF0000133; mir-449

Literature search
1 open access papers mention chi-mir-449b
(1 sentences)

Sequence

ugaccugaaucagguAGGCAGUGUAUUGUUAGCUGGCugcuuugggucaauucagcAGCCACAACUGCCCUGCCACUUgcuucuggauaaauucuuc
...((.(((.(((((.(((((.(((..(((.(.((((((((............))))))))))))))).)))))))))).))).))...........

Structure
--------uga  u   u     A     U   UU   A C        uuggg 
           cc gaa caggu GGCAG GUA  GUU G UGGCugcu     u
           || ||| ||||| ||||| |||  ||| | ||||||||      
           gg cuu gUUCA CCGUC CGU  CAA C ACCGAcga     c
cuucuuaaaua  u   c     -     C   --   - -        cuuaa 


Annotation confidence Not enough data
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Genome context
chr20: 24946735-24946831 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from chi-mir-449b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-449b-5p

Accession MIMAT0036232
Description Capra hircus chi-miR-449b-5p mature miRNA
Sequence 16 - AGGCAGUGUAUUGUUAGCUGGC - 37
Evidence experimental
Illumina [1]

Mature chi-miR-449b-3p

Accession MIMAT0036233
Description Capra hircus chi-miR-449b-3p mature miRNA
Sequence 57 - AGCCACAACUGCCCUGCCACUU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40