miRBase entry: chi-mir-454

Stem-loop chi-mir-454


Accession
MI0030799
Description
Capra hircus chi-mir-454 precursor miRNA
Gene family
MIPF0000174; mir-454


Sequence

cuguuuauuaccagauccuagaACCCUAUCGAUAUUGUCUCUGcuguguaaauagcucugagUAGUGCAAUAUUGCUUAUAGGGUuuugguguuugggaagaacaaugggcagg
(((((((((.((((((.((((((((((((((((((((((((.(((((....)))))...)))....)))))))))...)))))))))))).)))))).......))))))))).

Structure
-         ------a      c            ---         ----   --U     g 
 cuguuuauu       ccagau cuagaACCCUAU   CGAUAUUGU    CUC   Gcugu u
 |||||||||       |||||| ||||||||||||   |||||||||    |||   |||||  
 gacggguaa       gguuug gguuuUGGGAUA   GUUAUAACG    gag   cgaua a
g         caagaag      u            UUC         UGAU   ucu     a 


Annotation confidence Not enough data
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Genome context
chr19: 10138115-10138228 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-454
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-454-5p

Accession MIMAT0036239
Description Capra hircus chi-miR-454-5p mature miRNA
Sequence 23 - ACCCUAUCGAUAUUGUCUCUG - 43
Evidence experimental
Illumina [1]

Mature chi-miR-454-3p

Accession MIMAT0036240
Description Capra hircus chi-miR-454-3p mature miRNA
Sequence 63 - UAGUGCAAUAUUGCUUAUAGGGU - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40