miRBase entry: chi-mir-496

Stem-loop chi-mir-496


Accession
MI0030810
Description
Capra hircus chi-mir-496 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

gacacgucagaagccagcauccGAGUCGGGUACUCGAAUGGAgguuguccaugguguguucauuuuauuuaugaUGAGUAUUACAUGGCCAAUCUccuuucaguacuaaauucuucuuggg
.............((((.....((((..((((((.(((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))..))))...)))).

Structure
gacacgucagaag    caucc    CG      C   U        u     gu         uua 
             ccag     GAGU  GGUACU GAA GGAgguug ccaug  guguucauu   u
             ||||     ||||  |||||| ||| |||||||| |||||  |||||||||    
             gguu     cuua  ucauga cuu ccUCUAAC GGUAC  UAUGAGUag   u
------------g    --cuu    aa      -   u        C     AU         uau 


Annotation confidence Not enough data
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Genome context
chr21: 67138399-67138519 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from chi-mir-496
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-496-5p

Accession MIMAT0036257
Description Capra hircus chi-miR-496-5p mature miRNA
Sequence 23 - GAGUCGGGUACUCGAAUGGA - 42
Evidence experimental
Illumina [1]

Mature chi-miR-496-3p

Accession MIMAT0036258
Description Capra hircus chi-miR-496-3p mature miRNA
Sequence 75 - UGAGUAUUACAUGGCCAAUCU - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40