miRBase entry: chi-mir-542

Stem-loop chi-mir-542


Accession
MI0030819
Description
Capra hircus chi-mir-542 precursor miRNA
Gene family
MIPF0000185; mir-542

Literature search
2 open access papers mention chi-mir-542
(5 sentences)

Sequence

gucaaggaugcacagaccucagacaucUCGGGGAUCAUCAUGUCACGAGAuaccacugugcacuUGUGACAGAUUGAUAACUGAaaggucugggagccgcucaucuuca
....((((((..(.(..(((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...)))))))..).)..))))))..

Structure
guca      ca a ac       auc    GG    UCA         -A   c 
    aggaug  c g  cucagac   UCGG  AUCA   UGUCACGAG  uac a
    ||||||  | |  |||||||   ||||  ||||   |||||||||  |||  
    uucuac  g c  gggucug   AGUC  UAGU   ACAGUGUuc  gug c
--ac      uc c ga       gaa    AA    UAG         ac   u 


Annotation confidence Not enough data
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Genome context
chrX: 40340880-40340988 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from chi-mir-542
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-542-5p

Accession MIMAT0036272
Description Capra hircus chi-miR-542-5p mature miRNA
Sequence 28 - UCGGGGAUCAUCAUGUCACGAGA - 50
Evidence experimental
Illumina [1]

Mature chi-miR-542-3p

Accession MIMAT0036273
Description Capra hircus chi-miR-542-3p mature miRNA
Sequence 65 - UGUGACAGAUUGAUAACUGA - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40