miRBase entry: chi-mir-543

Stem-loop chi-mir-543


Accession
MI0030820
Description
Capra hircus chi-mir-543 precursor miRNA
Gene family
MIPF0000110; mir-329

Literature search
1 open access papers mention chi-mir-543
(2 sentences)

Sequence

gcugagcugccgaaugauccugACCUGUGGUGCUUAAGGAGaaguugcccgugucuuuuucgcuuuauaugugacgAAACAUUCGCGGUGCACUUCUuuuucaguauccaauucagccucgaa
((......)).....((..((((..((.((((((.((((((((((.(((((((....((((((.........).)))))....))))).)))))))))))).))))))))..))))..))...

Structure
gcugagcugccgaau  uc    CC  U      U          u  -     ucuu     - uuu 
               ga  cugA  UG GGUGCU AAGGAGaagu gc ccgug    uuucg c   a
               ||  ||||  || |||||| |||||||||| || |||||    ||||| |   u
               cu  gacu  ac cuauga uuuuUCUUCA CG GGCGC    AAAgc g   a
------------aag  cc    ua  -      c          -  U     UUAC     a ugu 


Annotation confidence Not enough data
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Genome context
chr21: 67110457-67110579 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from chi-mir-543
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-543-5p

Accession MIMAT0036274
Description Capra hircus chi-miR-543-5p mature miRNA
Sequence 23 - ACCUGUGGUGCUUAAGGAG - 41
Evidence experimental
Illumina [1]

Mature chi-miR-543-3p

Accession MIMAT0036275
Description Capra hircus chi-miR-543-3p mature miRNA
Sequence 77 - AAACAUUCGCGGUGCACUUCU - 97
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40