miRBase entry: chi-mir-655

Stem-loop chi-mir-655


Accession
MI0030826
Description
Capra hircus chi-mir-655 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

uucguuucagaacuguucagggauauuugaggagagguuauccguguuauguucgcuuggcucaucaugaAUAAUACAUGGUUAACCUCUCUuugaauaucaaacucugccucgagg
((((...((((...(((....(((((((((((((((((((.((((((..((((((..((......))))))))..)))))).))))))))))))))))))).)))))))...)))).

Structure
-    uuu    acu   cagg                   u      ua      cu  gc 
 uucg   caga   guu    gauauuugaggagagguua ccgugu  uguucg  ug  u
 ||||   ||||   |||    ||||||||||||||||||| ||||||  ||||||  ||   
 gagc   gucu   caa    cuauaaguuUCUCUCCAAU GGUACA  AUAagu  ac  c
g    ucc    ---   ---a                   U      UA      --  ua 


Annotation confidence Not enough data
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Genome context
chr21: 67125414-67125530 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from chi-mir-655
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-655

Accession MIMAT0036282
Description Capra hircus chi-miR-655 mature miRNA
Sequence 71 - AUAAUACAUGGUUAACCUCUCU - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40