Stem-loop sequence chi-mir-9

Accession

MI0030842 (change log)

Description

Capra hircus miR-9 stem-loop

Gene family

MIPF0000014; mir-9

Literature search

9 open access papers mention chi-mir-9
(13 sentences)

Stem-loop

   -----------   -    -            g     gu  ca 
5'            ucu cuuu gguuaucuagcu uauga  gc  c
              ||| |||| |||||||||||| |||||  ||   
3'            aga gaaa ccaauagaucga auacu  cg  a
   acucucaguaa   u    g            a     gc  ag 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (CHIR_2.0; GCA_000317765.2)	Overlapping transcripts
chr21: 20827391-20827467 [+]	intergenic
chr21: 20828583-20828659 [+]	intergenic

Database links

• miRBase Tracker:MI0030842

Mature sequence chi-miR-9-5p

• Accession: MIMAT0036307
• Sequence: 3 - ucuuugguuaucuagcuguauga - 25
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-9-3p

• Accession: MIMAT0036308
• Sequence: 42 - auaaagcuagauaaccgaaa - 61
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).