miRBase entry: chi-mir-9

Stem-loop chi-mir-9


Accession
MI0030842
Description
Capra hircus chi-mir-9 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
9 open access papers mention chi-mir-9
(13 sentences)

Sequence

ucUCUUUGGUUAUCUAGCUGUAUGAgugccacagagccgucAUAAAGCUAGAUAACCGAAAguagaaaugacucuca
(((((((((((((((((((.(((((..((......))..))))).)))))))))))).)))).)))...........

Structure
-----------   -    -            G     gu  ca 
           ucU CUUU GGUUAUCUAGCU UAUGA  gc  c
           ||| |||| |||||||||||| |||||  ||   
           aga gAAA CCAAUAGAUCGA AUAcu  cg  a
acucucaguaa   u    G            A     gc  ag 


Annotation confidence Not enough data
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Genome context
chr21: 20827391-20827467 [+]

Database links

Mature chi-miR-9-5p

Accession MIMAT0036307
Description Capra hircus chi-miR-9-5p mature miRNA
Sequence 3 - UCUUUGGUUAUCUAGCUGUAUGA - 25
Evidence experimental
Illumina [1]

Mature chi-miR-9-3p

Accession MIMAT0036308
Description Capra hircus chi-miR-9-3p mature miRNA
Sequence 42 - AUAAAGCUAGAUAACCGAAA - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40