Stem-loop sequence chi-mir-99a

Accession

MI0030845 (change log)

Description

Capra hircus miR-99a stem-loop

Gene family

MIPF0000033; mir-10

Literature search

9 open access papers mention chi-mir-99a
(25 sentences)

Stem-loop

   cc          a         uc   u      g  aag 
5'   cauuggcaua acccguaga  cga cuugug ug   u
     |||||||||| |||||||||  ||| |||||| ||    
3'   gugacugugu uggguaucu  gcu gaacac gc   g
   gu          c         uc   c      -  cag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chr1: 20810454-20810534 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-mir-99a

• chi-mir-99a: chr1: 20810454-20810534 [-]
• chi-let-7c: chr1: 20809702-20809809 [-]

Database links

• miRBase Tracker:MI0030845

Mature sequence chi-miR-99a-5p

• Accession: MIMAT0036312
• Sequence: 13 - aacccguagauccgaucuugu - 33
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-99a-3p

• Accession: MIMAT0036313
• Sequence: 50 - caagcucgcuucuaugggucugu - 72
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).