miRBase entry: dsi-mir-972

Stem-loop dsi-mir-972


Accession
MI0030854
Description
Drosophila simulans dsi-mir-972 precursor miRNA


Sequence

agaaugauagugaauugcUAAAUAUUUUCUUUGUAUAAAugacuuuuaacaUUUGUACAAUAUUAAUAUUUaaacauuucucgaaucaaaguaugccacauca
....((((.(.(((.((.((((((((....(((((((((((........)))))))))))....))))))))..)).))).)..))))...............

Structure
-----------agaa    -a u   u  -c        UUCU           acu 
               ugau  g gaa ug  UAAAUAUU    UUGUAUAAAug   u
               ||||  | ||| ||  ||||||||    |||||||||||    
               acua  c cuu ac  aUUUAUAA    AACAUGUUUac   u
acuacaccguaugaa    ag u   u  aa        UUAU           aau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 15010940-15011042 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from dsi-mir-972
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dsi-miR-972-5p

Accession MIMAT0039111
Description Drosophila simulans dsi-miR-972-5p mature miRNA
Sequence 19 - UAAAUAUUUUCUUUGUAUAAA - 39
Evidence experimental
Illumina [1]

Mature dsi-miR-972-3p

Accession MIMAT0039112
Description Drosophila simulans dsi-miR-972-3p mature miRNA
Sequence 52 - UUUGUACAAUAUUAAUAUUU - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250