miRBase entry: dsi-mir-973

Stem-loop dsi-mir-973


Accession
MI0030855
Description
Drosophila simulans dsi-mir-973 precursor miRNA


Sequence

cguauacuuuuCCGGGUUGGUGGUUGAACUUCGauuuuaagcauuuaaauaagauaaaUCUGUUCAUUCUUCGACCCAAAaaguucacgugaaga
(((..((((((..(((((((.((.(((((...(((((..................))))).))))).)).))))))).))))))..)))......

Structure
------   au      CC       U  U     UUC     uaagcauu 
      cgu  acuuuu  GGGUUGG GG UGAAC   Gauuu        u
      |||  ||||||  ||||||| || |||||   |||||         
      gca  ugaaAA  CCCAGCU CU ACUUG   CUaaa        a
agaagu   cu      -A       U  U     --U     uagaauaa 


Annotation confidence Not enough data
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Genome context
chrX: 15011304-15011398 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from dsi-mir-973
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dsi-miR-973-5p

Accession MIMAT0039113
Description Drosophila simulans dsi-miR-973-5p mature miRNA
Sequence 12 - CCGGGUUGGUGGUUGAACUUCG - 33
Evidence experimental
Illumina [1]

Mature dsi-miR-973-3p

Accession MIMAT0039114
Description Drosophila simulans dsi-miR-973-3p mature miRNA
Sequence 59 - UCUGUUCAUUCUUCGACCCAAA - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250