miRBase entry: dse-mir-2498a

Stem-loop dse-mir-2498a


Accession
MI0030865
Description
Drosophila sechellia dse-mir-2498a precursor miRNA


Sequence

uauAUAAGUAUGUUAUUCUAUUUUGuguguuuuacaaaAUCUGUGUAACAUGCUUAAUAUAuuu
((((((((((((((((.(.((((((((.....))))))))..).))))))))))).)))))...

Structure
---     -           U -U        u 
   uauAU AAGUAUGUUAU C  AUUUUGug g
   ||||| ||||||||||| |  |||||||| u
   AUAUA UUCGUACAAUG G  UAaaacau u
uuu     A           U UC        u 


Annotation confidence Not enough data
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Genome context
scaffold_1: 14026948-14027011 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from dse-mir-2498a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dse-miR-2498a-5p

Accession MIMAT0039126
Description Drosophila sechellia dse-miR-2498a-5p mature miRNA
Sequence 4 - AUAAGUAUGUUAUUCUAUUUUG - 25
Evidence experimental
Illumina [1]

Mature dse-miR-2498a-3p

Accession MIMAT0039127
Description Drosophila sechellia dse-miR-2498a-3p mature miRNA
Sequence 39 - AUCUGUGUAACAUGCUUAAUAUA - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250