miRBase entry: dse-mir-4966-2

Stem-loop dse-mir-4966-2


Accession
MI0030882
Description
Drosophila sechellia dse-mir-4966-2 precursor miRNA


Sequence

auguauuguuaugcgaaggauacuauauacuugucgacacuggcgUACUAAAUAUAUUGCACAUGUUcauacauuuucauacaUGUAAAACAUAUUUAGAACUCAaguaccgaaaaaugaacaucgaaacgggagaacacgaacaucaugcuac
..(((((.((.....)).))))).................((((((.((((((((.((..((((((..............))))))..)).))))))))..(((..((..(((..........)))..))..)))............)))))).

Structure
auguauuguuaugcgaaggauacuauauacuugucgacac      -----------------------------------------------A        A  GC      Ucauac 
                                        uggcgU                                                CUAAAUAU UU  ACAUGU      a
                                        ||||||                                                |||||||| ||  ||||||       
                                        aucgua                                                GAUUUAUA AA  UGUaca      u
---------------------------------------c      cuacaagcacaagagggcaaagcuacaaguaaaaagccaugaACUCAA        C  AA      uacuuu 


Annotation confidence Not enough data
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Genome context
scaffold_8: 1734810-1734963 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from dse-mir-4966-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dse-miR-4966-5p

Accession MIMAT0039144
Description Drosophila sechellia dse-miR-4966-5p mature miRNA
Sequence 46 - UACUAAAUAUAUUGCACAUGUU - 67
Evidence experimental
Illumina [1]

Mature dse-miR-4966-2-3p

Accession MIMAT0039146
Description Drosophila sechellia dse-miR-4966-2-3p mature miRNA
Sequence 84 - UGUAAAACAUAUUUAGAACUCA - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250