miRBase entry: dse-mir-978b

Stem-loop dse-mir-978b


Accession
MI0030889
Description
Drosophila sechellia dse-mir-978b precursor miRNA


Sequence

caauuuacgggacuggacacgauucucgacuacaacgUAAGCCAGUGGCGUAGAUUGCag
(((((((((..(((((..(((..............)))...)))))..)))))))))...

Structure
---         gg     -ac   auucuc 
   caauuuacg  acugg   acg      g
   |||||||||  |||||   |||       
   GUUAGAUGC  UGACC   Ugc      a
gaC         GG     GAA   aacauc 


Annotation confidence Not enough data
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Genome context
scaffold_8: 1737879-1737938 [-]
Clustered miRNAs
9 other miRNAs are < 10 kb from dse-mir-978b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dse-miR-978b

Accession MIMAT0039155
Description Drosophila sechellia dse-miR-978b mature miRNA
Sequence 38 - UAAGCCAGUGGCGUAGAUUGC - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250