miRBase entry: dvi-mir-9538b

Stem-loop dvi-mir-9538b


Accession
MI0030943
Description
Drosophila virilis dvi-mir-9538b precursor miRNA


Sequence

AAUUGUUCUUGCUGCCGUCUcaucuuacauuugguucuugcucgaUGAGAUCAGUCAGAACAAUUCGu
(((((((((.((((..((((((((...((.........))...)))))))))))).)))))))))...

Structure
---         U    CC        uua  uuu 
   AAUUGUUCU GCUG  GUCUcauc   ca   g
   ||||||||| ||||  ||||||||   ||   g
   UUAACAAGA UGAC  UAGAGUag   gu   u
uGC         C    --        cuc  ucu 


Annotation confidence Not enough data
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Genome context
scaffold_12855: 6282879-6282946 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from dvi-mir-9538b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-9538b-5p

Accession MIMAT0039244
Description Drosophila virilis dvi-miR-9538b-5p mature miRNA
Sequence 1 - AAUUGUUCUUGCUGCCGUCU - 20
Evidence experimental
Illumina [1]

Mature dvi-miR-9538b-3p

Accession MIMAT0039245
Description Drosophila virilis dvi-miR-9538b-3p mature miRNA
Sequence 46 - UGAGAUCAGUCAGAACAAUUCG - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250