miRBase entry: dvi-mir-9705-1

Stem-loop dvi-mir-9705-1


Accession
MI0030956
Description
Drosophila virilis dvi-mir-9705-1 precursor miRNA


Sequence

UCUGAUCAGUUGUGUAGUGUGGcguuuuacugacuugcUACGAUACCAACUGGCCAGAGg
((((.(((((((.(((.(((((((((.....)))..)))))).)))))))))).))))..

Structure
--    A       U   G      --   u 
  UCUG UCAGUUG GUA UGUGGc  guu u
  |||| ||||||| ||| ||||||  ||| a
  AGAC GGUCAAC CAU GCAUcg  cag c
gG    C       -   A      uu   u 


Annotation confidence Not enough data
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Genome context
scaffold_12963: 330138-330197 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dvi-mir-9705-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-9705-5p

Accession MIMAT0039260
Description Drosophila virilis dvi-miR-9705-5p mature miRNA
Sequence 1 - UCUGAUCAGUUGUGUAGUGUGG - 22
Evidence experimental
Illumina [1]

Mature dvi-miR-9705-3p

Accession MIMAT0039261
Description Drosophila virilis dvi-miR-9705-3p mature miRNA
Sequence 39 - UACGAUACCAACUGGCCAGAG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250