miRBase entry: dvi-mir-9542c

Stem-loop dvi-mir-9542c


Accession
MI0030979
Description
Drosophila virilis dvi-mir-9542c precursor miRNA


Sequence

ACUGGCGCUUUAUAAUCGAAGAgugauuuuuauaugcucUUUGAUUGUAAAGGGCUAUAGcg
..((((.(((((((((((((((((.((......))))))))))))))))))).)))).....

Structure
---AC    G                 g  uu 
     UGGC CUUUAUAAUCGAAGAgu au  u
     |||| ||||||||||||||||| ||   
     AUCG GAAAUGUUAGUUUcucg ua  u
gcGAU    G                 -  ua 


Annotation confidence Not enough data
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Genome context
scaffold_12970: 9416655-9416716 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from dvi-mir-9542c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-9542c-5p

Accession MIMAT0039303
Description Drosophila virilis dvi-miR-9542c-5p mature miRNA
Sequence 1 - ACUGGCGCUUUAUAAUCGAAGA - 22
Evidence experimental
Illumina [1]

Mature dvi-miR-9542c-3p

Accession MIMAT0039304
Description Drosophila virilis dvi-miR-9542c-3p mature miRNA
Sequence 40 - UUUGAUUGUAAAGGGCUAUAG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250