miRBase entry: ocu-mir-512b

Stem-loop ocu-mir-512b

Accession

MI0030997

Description

Oryctolagus cuniculus ocu-mir-512b precursor miRNA

Gene family

MIPF0000518; mir-512

Sequence

aggggagcccgauccgcgggACUCAGCCCUGGGGGCACUUCCuguugucaggccuggAAGUGCCGUCAAGGUUGAGCUUcgcugaccgaggaggacgu
.......((((.((.(((((.(((((((.(((.(((((((((.(((....)))..))))))))).))).))))))).))))).)).)).)).......

Structure

aggggag  -  a  c     A       C   G         -u   g 
       cc cg uc gcggg CUCAGCC UGG GGCACUUCC  guu u
       || || || ||||| ||||||| ||| |||||||||  |||  
       gg gc ag cgcUU GAGUUGG ACU CCGUGAAgg  cgg c
ugcagga  a  c  u     C       A   G         uc   a

Annotation confidence Not enough data

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Genome context

GL018924.1: 228721-228818 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ocu-mir-512b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-512b-5p

Accession	MIMAT0036333
Description	Oryctolagus cuniculus ocu-miR-512b-5p mature miRNA
Sequence	21 - ACUCAGCCCUGGGGGCACUUCC - 42
Evidence	experimental SOLiD [1]

Mature ocu-miR-512b-3p

Accession	MIMAT0036334
Description	Oryctolagus cuniculus ocu-miR-512b-3p mature miRNA
Sequence	58 - AAGUGCCGUCAAGGUUGAGCUU - 79
Evidence	experimental SOLiD [1]

References

PubMed ID: 23426804
Discovery of pluripotency-associated microRNAs in rabbit preimplantation embryos and embryonic stem-like cells
"Maraghechi P, Hiripi L, Toth G, Bontovics B, Bosze Z, Gocza E"
"Reproduction (2013) 145:421-437