miRBase entry: gma-MIR5780b

Stem-loop gma-MIR5780b


Accession
MI0031003
Description
Glycine max gma-MIR5780b precursor miRNA
Gene family
MIPF0001918; MIR5780


Sequence

uuuuuguuuugaauuuucguuguUCUGAGUCCAUGAUAUAUUAAAaguuuuguuccuugucccugcagucaauuaagugauaacgugguaccauccuaacauauauugaaagagccguugagauaaugucacaucaucacuuaacucacaacaggaacuugaaacaaaacuuuuaauauaucagggauucaaaacaacgaaaaaauuuaucaagga
((((((.......(((((((((((.(((((((.(((((((((((((((((((((.(..((.((((..((...(((((((((...((((((..(((.((((................)))).)))..))))))...)))))))))...))..)))).))..).))))))))))))))))))))).))))))).))))))))))).......))))))

Structure
      uuuugaa           C       A                     c uu  c    ca  caa         aac      cc   c    auauauu 
uuuuug       uuuucguuguU UGAGUCC UGAUAUAUUAAAaguuuuguu c  gu ccug  gu   uuaagugau   guggua  auc uaac       g
||||||       ||||||||||| ||||||| ||||||||||||||||||||| |  || ||||  ||   |||||||||   ||||||  ||| ||||        
aggaac       aaaagcaacaa acuuagg acuauauaauuuucaaaacaa g  ca ggac  ca   aauucacua   cacugu  uag guug       a
      uauuuaa           a       g                     a uu  a    aa  cuc         cua      aa   a    ccgagaa 


Annotation confidence Not enough data
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Genome context
chr13: 36156892-36157107 [-]

Database links

Mature gma-miR5780b

Accession MIMAT0036341
Description Glycine max gma-miR5780b mature miRNA
Sequence 24 - UCUGAGUCCAUGAUAUAUUAAA - 45
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153

  2. PubMed ID: 25747880
    Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
    "Plant Cell (2015) 27:546-562