Stem-loop gma-MIR5671b

Accession

MI0031010

Description

Glycine max gma-MIR5671b precursor miRNA

Literature search

1 open access papers mention gma-MIR5671b
(1 sentences)

Sequence

59539 reads, 1704.0 reads per million, 178 experiments

ugguucguCAUGGAAGUGAAUCGGGUGACUcuuccgcguugaucuuaucggaaaaaacccaagucucacgucugccaaagauaaaguauauaagugaggaauaauccuaaaaacuaguuuuuagaguugaauuagauccaaauucagauucuauaacaucucuccuccaccaccuccuuaagggucaugucaaauuuuugaguUACCCGAAUUUGCUUCCAUGAUgaauc
.(((((((((((((((((((((((((((((((((((.((.......)))))))..........((((((((((.....))))...........)))))).................(((..((((((((((((.......)))))).)))))).)))..........((..((((......))))..))..........)))))))))).))))))))))))))))))))

Structure

u                    -          uuccgcguugaucuuaucggaaaaaacccaagucucacgucugccaaagauaaaguauauaagugaggaauaauccuaaaaacua   uu      -      ag 
 gguucguCAUGGAAGUGAAU CGGGUGACUc                                                                                     guu  uagagu ugaauu  a
 |||||||||||||||||||| ||||||||||                                                                                     |||  |||||| ||||||  u
 cuaagUAGUACCUUCGUUUA GCCCAUugag                                                                                     caa  aucuua acuuaa  c
-                    A          -------------------------------------------uuuuuaaacuguacugggaauuccuccaccaccuccucucua   -u      g      ac 

Annotation confidence High

Genome context

chr18: 4359887-4360116 [+]

Mature gma-miR5671b-5p

• Accession: MIMAT0054419
• Description: Glycine max gma-miR5671b-5p mature miRNA
• Sequence: 9 - CAUGGAAGUGAAUCGGGUGACU - 30
• Evidence: experimental ; unknown

Mature gma-miR5671b-3p

• Accession: MIMAT0036348
• Description: Glycine max gma-miR5671b-3p mature miRNA
• Sequence: 204 - UACCCGAAUUUGCUUCCAUGAU - 225
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153