miRBase entry: gma-MIR5780d

Stem-loop gma-MIR5780d


Accession
MI0031058
Description
Glycine max gma-MIR5780d precursor miRNA
Gene family
MIPF0001918; MIR5780


Sequence

auuuuUGUUUUGAGUUUCUGAUAAAUUuuuccauuauuccgaguuccugauauauuaaaaguuuuguuuugggucucuaucgucaauuaagugaugaugugagcucuuccaacauauaucagucguugagaugguaccacaucaucacuuaacugacgacaaagacuuaaaauaaaaauuuuaauauaucaagaauucacaacaacggaaaaauuuaucagaaacucaaaacaaaaauc
((((((((((((((((((((((((((((((((........((((((.(((((((((((((.(((((((((((((((...((((((.(((((((((((((((.(((..((((((...........)))).)).)))..))))))))))))))).))))))...))))))))))))))).))))))))))))).))))))........)))))))))))))))))))))))))))))))).

Structure
-                                auuauucc      c             g               cua      a               -a   cu  -    auau 
 auuuuUGUUUUGAGUUUCUGAUAAAUUuuucc        gaguuc ugauauauuaaaa uuuuguuuugggucu   ucguca uuaagugaugaugug  gcu  uc caac    a
 ||||||||||||||||||||||||||||||||        |||||| ||||||||||||| |||||||||||||||   |||||| |||||||||||||||  |||  || ||||    u
 uaaaaacaaaacucaaagacuauuuaaaaagg        cuuaag acuauauaauuuu aaaauaaaauucaga   agcagu aauucacuacuacac  ugg  ag guug    c
c                                caacaaca      a             a               aac      c               ca   -u  a    cuga 


Annotation confidence Not enough data
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Genome context
chr9: 5111839-5112077 [+]

Database links

Mature gma-miR5780d

Accession MIMAT0036396
Description Glycine max gma-miR5780d mature miRNA
Sequence 6 - UGUUUUGAGUUUCUGAUAAAUU - 27
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153