miRBase entry: ggo-mir-515-1

Stem-loop ggo-mir-515-1

Accession

MI0031067

Description

Gorilla gorilla ggo-mir-515-1 precursor miRNA

Gene family

MIPF0000020; mir-515

Literature search

1 open access papers mention ggo-mir-515-1
(2 sentences)

Sequence

uuggagcgagaagaucucaugcagucaUUCUCCAAAAGAAAGCACUUUCUGuugucugaaagcaGAGUGCCUUCUUUUGGAGCGUUacuguuugagaaaaaccgcguugaaguug
((((.(((.(....(((((.(((((.((.(((((((((((.((((..((((((.......)))))))))).))))))))))).)).))))).)))))....)))).)))).....

Structure

-----    a   a aaga     u     c  U           A    UU      gu 
     uugg gcg g    ucuca gcagu aU CUCCAAAAGAA GCAC  UCUGuu  c
     |||| ||| |    ||||| ||||| || ||||||||||| ||||  ||||||  u
     aguu cgc c    agagu uguca UG GAGGUUUUCUU CGUG  AGacga  g
guuga    g   - aaaa     u     U  C           C    --      aa

Annotation confidence Not enough data

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Genome context

chr19: 53019793-53019907 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ggo-mir-515-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-515-5p

Accession	MIMAT0036405
Description	Gorilla gorilla ggo-miR-515-5p mature miRNA
Sequence	28 - UUCUCCAAAAGAAAGCACUUUCUG - 51
Evidence	not_experimental

Mature ggo-miR-515-3p

Accession	MIMAT0036406
Description	Gorilla gorilla ggo-miR-515-3p mature miRNA
Sequence	65 - GAGUGCCUUCUUUUGGAGCGUU - 86
Evidence	not_experimental

References

PubMed ID: 24126940
Exploration of miRNA families for hypotheses generation
"Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
"Sci Rep (2013) 3:2940