miRBase entry: ggo-mir-519c-1

Stem-loop ggo-mir-519c-1


Accession
MI0031071
Description
Gorilla gorilla ggo-mir-519c-1 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cuggagcaagaagaucccaugcugugaccCUCUAGAGGGAAGCGCUUUCUGuugucugaaagaagagAAAGUGCAUCCUUUUAGAGGUUuacuguuugaggaaagcagcggugaaguug
..............(((((.((.((((.((((((((((((.(((((((((.((.(.....).)).))))))))).)))))))))))).)))).)).)).)))...((((......))))

Structure
---cuggagcaagaaga   -  u  u    c            A         G  g c 
                 ucc ca gc guga cCUCUAGAGGGA GCGCUUUCU uu u u
                 ||| || || |||| |||||||||||| ||||||||| || | g
                 agg gu ug cauU GGAGAUUUUCCU CGUGAAAga aa a a
guugaaguggcgacgaa   a  u  u    U            A         g  g a 


Annotation confidence Not enough data
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Genome context
chr19: 53038851-53038969 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ggo-mir-519c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-519c-5p

Accession MIMAT0036410
Description Gorilla gorilla ggo-miR-519c-5p mature miRNA
Sequence 30 - CUCUAGAGGGAAGCGCUUUCUG - 51
Evidence not_experimental

Mature ggo-miR-519c-3p

Accession MIMAT0036411
Description Gorilla gorilla ggo-miR-519c-3p mature miRNA
Sequence 68 - AAAGUGCAUCCUUUUAGAGGUU - 89
Evidence not_experimental

References

  1. PubMed ID: 24126940
    Exploration of miRNA families for hypotheses generation
    "Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
    "Sci Rep (2013) 3:2940