miRBase entry: ggo-mir-517c-2

Stem-loop ggo-mir-517c-2

Accession

MI0031085

Description

Gorilla gorilla ggo-mir-517c-2 precursor miRNA

Gene family

MIPF0000020; mir-515

Sequence

cuggagcaagaagaccucaugcugugacCCUCUAGAUGGAAGCACUGUCUguugucuuaagaaaagAUCGUGCAUCCCUUUAGAGUGUuacuguuugagaaaagcaacguugaag
...............((((.((.(((((.(((((((.(((.((((.((((.((........)).)))).)))).))).))))))).))))).)).))))................

Structure

-cuggagcaagaagac    u  u     C       U   A    U    g  guc 
                cuca gc gugac CUCUAGA GGA GCAC GUCU uu   u
                |||| || ||||| ||||||| ||| |||| |||| ||    
                gagu ug cauUG GAGAUUU CCU CGUG UAga aa   u
gaaguugcaacgaaaa    u  u     U       C   A    C    a  gaa

Annotation confidence Not enough data

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Genome context

chr19: 53063883-53063997 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ggo-mir-517c-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-517c-5p

Accession	MIMAT0036432
Description	Gorilla gorilla ggo-miR-517c-5p mature miRNA
Sequence	29 - CCUCUAGAUGGAAGCACUGUCU - 50
Evidence	not_experimental

Mature ggo-miR-517c-3p

Accession	MIMAT0036433
Description	Gorilla gorilla ggo-miR-517c-3p mature miRNA
Sequence	67 - AUCGUGCAUCCCUUUAGAGUGU - 88
Evidence	not_experimental

References

PubMed ID: 24126940
Exploration of miRNA families for hypotheses generation
"Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
"Sci Rep (2013) 3:2940