miRBase entry: ppy-mir-515-3

Stem-loop ppy-mir-515-3


Accession
MI0031101
Description
Pongo pygmaeus ppy-mir-515-3 precursor miRNA
Gene family
MIPF0000020; mir-515

Literature search
1 open access papers mention ppy-mir-515-3
(2 sentences)

Sequence

uuggagugagaagaucucauguagucaUUCUCCAAAAGAAAGCACUUUCUGuugucugaaagcaGAGUGCCUUCUUUUGGAGCGUUacuguuugagaaaaaccacguugaaguug
((((.(((.(....(((((..((((.((.(((((((((((.((((..((((((.......)))))))))).))))))))))).)).))))..)))))....)))).)))).....

Structure
-----    a   a aaga     ug    c  U           A    UU      gu 
     uugg gug g    ucuca  uagu aU CUCCAAAAGAA GCAC  UCUGuu  c
     |||| ||| |    |||||  |||| || ||||||||||| ||||  ||||||  u
     aguu cac c    agagu  guca UG GAGGUUUUCUU CGUG  AGacga  g
guuga    g   - aaaa     uu    U  C           C    --      aa 


Annotation confidence Not enough data
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Genome context
chr19: 55453959-55454073 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from ppy-mir-515-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-515-5p

Accession MIMAT0015943
Description Pongo pygmaeus ppy-miR-515-5p mature miRNA
Sequence 28 - UUCUCCAAAAGAAAGCACUUUCUG - 51
Evidence not_experimental

Mature ppy-miR-515-3p

Accession MIMAT0015944
Description Pongo pygmaeus ppy-miR-515-3p mature miRNA
Sequence 65 - GAGUGCCUUCUUUUGGAGCGUU - 86
Evidence not_experimental

References

  1. PubMed ID: 24126940
    Exploration of miRNA families for hypotheses generation
    "Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
    "Sci Rep (2013) 3:2940