miRBase entry: ppy-mir-517c-1

Stem-loop ppy-mir-517c-1

Accession

MI0031103

Description

Pongo pygmaeus ppy-mir-517c-1 precursor miRNA

Gene family

MIPF0000020; mir-515

Sequence

ugugacCCUCUAGAUGGAAGCACUGUCUguugucuaauaaaagAUCGUGCAUCCUUUUAGAGUGUuacuguuugagaaaagcaacguugaag
.(((((.(((((((.(((.((((.((((.((((...)))).)))).)))).))).))))))).)))))(((((.....))))).........

Structure

-----------------------u     C       U   A    U    g    c 
                        gugac CUCUAGA GGA GCAC GUCU uugu  
                        ||||| ||||||| ||| |||| |||| |||| u
                        cauUG GAGAUUU CCU CGUG UAga aaua  
gaaguugcaacgaaaagaguuugu     U       U   A    C    a    a

Annotation confidence Not enough data

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Genome context

chr19: 55492961-55493052 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from ppy-mir-517c-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-517c-5p

Accession	MIMAT0036447
Description	Pongo pygmaeus ppy-miR-517c-5p mature miRNA
Sequence	7 - CCUCUAGAUGGAAGCACUGUCU - 28
Evidence	not_experimental

Mature ppy-miR-517c-??

Accession	MIMAT0036449
Description	Pongo pygmaeus ppy-miR-517c-?? mature miRNA
Sequence	44 - AUCGUGCAUCCUUUUAGAGUGU - 65
Evidence	not_experimental

References

PubMed ID: 24126940
Exploration of miRNA families for hypotheses generation
"Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
"Sci Rep (2013) 3:2940