miRBase entry: ppy-mir-520i

Stem-loop ppy-mir-520i

Accession

MI0031105

Description

Pongo pygmaeus ppy-mir-520i precursor miRNA

Gene family

MIPF0000020; mir-515

Sequence

cuggagcgagaagaucucaugcugugacuCUACAAAGGGAAGCCCUUUCuguugucuaaaagaaaagaaagcgcuucccuuugguggguuacgguuuga
.......((((...))))..((((((((((..(((((((((((.((((((....(((...)))..)))))).)))))))))))..))))))))))....

Structure

cuggagcgagaagaucucau          UA           C      guug   a 
                    gcugugacuC  CAAAGGGAAGC CUUUCu    ucu  
                    ||||||||||  ||||||||||| ||||||    ||| a
                    uggcauuggg  guuucccuucg gaaaga    aga  
----------------aguu          ug           c      --aa   a

Annotation confidence Not enough data

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Genome context

chr19: 55513927-55514025 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppy-mir-520i

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-520i

Accession	MIMAT0036452
Description	Pongo pygmaeus ppy-miR-520i mature miRNA
Sequence	30 - CUACAAAGGGAAGCCCUUUC - 49
Evidence	not_experimental

References

PubMed ID: 24126940
Exploration of miRNA families for hypotheses generation
"Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
"Sci Rep (2013) 3:2940