Stem-loop ppy-mir-516a-2

Accession

MI0031107

Description

Pongo pygmaeus ppy-mir-516a-2 precursor miRNA

Gene family

MIPF0000020; mir-515

Sequence

caagaagaucucaggcugugaccUUCUCGAGGAAAGAAGCACUUUCuguugucugaaagaaaagaaagugcuuccuuucaggagaguugacgguuuggagaaaagcaacguugaag
........(((((((((((.(.((.(((..((((.((((((((((((....(((...)))..)))))))))))).))))..))))).).))))))).))))...............

Structure

-------caagaaga    -       g c  U   GA    A            guug   g 
               ucuc aggcugu a cU CUC  GGAA GAAGCACUUUCu    ucu  
               |||| ||||||| | || |||  |||| ||||||||||||    ||| a
               agag uuuggca u ga gag  cuuu cuucgugaaaga    aga  
gaaguugcaacgaaa    g       g u  -   ga    c            --aa   a 

Annotation confidence Not enough data

Genome context

chr19: 55535304-55535419 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from ppy-mir-516a-2

Mature ppy-miR-516a

• Accession: MIMAT0036453
• Description: Pongo pygmaeus ppy-miR-516a mature miRNA
• Sequence: 24 - UUCUCGAGGAAAGAAGCACUUUC - 46
• Evidence: not_experimental

References

1. PubMed ID: 24126940
   Exploration of miRNA families for hypotheses generation
   "Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
   "Sci Rep (2013) 3:2940