miRBase entry: ptr-mir-518g

Stem-loop ptr-mir-518g


Accession
MI0031109
Description
Pan troglodytes ptr-mir-518g precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

aagaagaucucgugcugugacuCUGCAAAGGGAAGCCCUUUCuguugucuaaaagaauaGAAAGCGCUUCCCUUUGGAGUGuuacgguuugagaaaa
.......(((((.((((((((.((.(((((((((((.(((((((((.(.....).))))))))).))))))))))).)).)))))))).)))))...

Structure
aagaaga     u        u  G           C         g c 
       ucucg gcugugac CU CAAAGGGAAGC CUUUCuguu u u
       ||||| |||||||| || ||||||||||| ||||||||| | a
       agagu uggcauuG GA GUUUCCCUUCG GAAAGauaa a a
----aaa     u        U  G           C         g a 


Annotation confidence Not enough data
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Genome context
chr19: 56078436-56078532 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from ptr-mir-518g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-518g-5p

Accession MIMAT0036454
Description Pan troglodytes ptr-miR-518g-5p mature miRNA
Sequence 23 - CUGCAAAGGGAAGCCCUUUC - 42
Evidence not_experimental

Mature ptr-miR-518g-3p

Accession MIMAT0036455
Description Pan troglodytes ptr-miR-518g-3p mature miRNA
Sequence 60 - GAAAGCGCUUCCCUUUGGAGUG - 81
Evidence not_experimental

References

  1. PubMed ID: 24126940
    Exploration of miRNA families for hypotheses generation
    "Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
    "Sci Rep (2013) 3:2940