miRBase entry: ptr-mir-519f

Stem-loop ptr-mir-519f


Accession
MI0031110
Description
Pan troglodytes ptr-mir-519f precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

gcaagaagaccucaggcugugacaCUCUAGAGGGAAGCGCUUUCUGuuuucugaaaaagAAAGUGCAUCCUUUUAGAGUGUuacuguuugagaaaagcaacguugaag
..........(((((((.(((((((((((((((((.(((((((((............))))))))).))))))))))))))))).)))))))................

Structure
------gcaagaagac       u                 A         Guuuu 
                cucaggc gugacaCUCUAGAGGGA GCGCUUUCU     c
                ||||||| ||||||||||||||||| |||||||||      
                gaguuug cauUGUGAGAUUUUCCU CGUGAAAga     u
gaaguugcaacgaaaa       u                 A         aaaag 


Annotation confidence Not enough data
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Genome context
chr19: 56099801-56099908 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from ptr-mir-519f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-519f-5p

Accession MIMAT0036456
Description Pan troglodytes ptr-miR-519f-5p mature miRNA
Sequence 25 - CUCUAGAGGGAAGCGCUUUCUG - 46
Evidence not_experimental

Mature ptr-miR-519f-3p

Accession MIMAT0036457
Description Pan troglodytes ptr-miR-519f-3p mature miRNA
Sequence 60 - AAAGUGCAUCCUUUUAGAGUGU - 81
Evidence not_experimental

References

  1. PubMed ID: 24126940
    Exploration of miRNA families for hypotheses generation
    "Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
    "Sci Rep (2013) 3:2940