miRBase entry: oha-mir-100

Stem-loop oha-mir-100


Accession
MI0031313
Description
Ophiophagus hannah oha-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

ccugccgguugccacaAACCCGUAGAUCCGAACUUGUGCUccuauccuACACAAGCUUGUAUCUAUAGGUaugugucugcuugg
....(((((.(.((((.(((.((((((.(((.((((((...........)))))).))).)))))).))).)))).).)).)))

Structure
ccug   -  u c    A   C      C   A      CUcc 
    ccg gu g caca ACC GUAGAU CGA CUUGUG    u
    ||| || | |||| ||| |||||| ||| ||||||    a
    ggu cg c gugu UGG UAUCUA GUU GAACAC    u
----   u  u u    a   A      U   C      Aucc 


Annotation confidence Not enough data
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Genome context
AZIM01002460.1: 28414-28497 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oha-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-100-5p

Accession MIMAT0036648
Description Ophiophagus hannah oha-miR-100-5p mature miRNA
Sequence 17 - AACCCGUAGAUCCGAACUUGUGCU - 40
Evidence not_experimental

Mature oha-miR-100-3p

Accession MIMAT0036649
Description Ophiophagus hannah oha-miR-100-3p mature miRNA
Sequence 49 - ACACAAGCUUGUAUCUAUAGGU - 70
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656