miRBase entry: oha-mir-130a

Stem-loop oha-mir-130a


Accession
MI0031335
Description
Ophiophagus hannah oha-mir-130a precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

cugUGCCCUUUUUCUGUUGUACUacugggagcucucauuagCAGUGCAAUAUUAAAAGGGCAUuggcuggcagagguu
(.((((((((((..(((((((((.((((((....)).)))).)))))))))..)))))))))).)(((......))).

Structure
------------- u          UC         a    -  g 
             c gUGCCCUUUU  UGUUGUACU cugg ga c
             | ||||||||||  ||||||||| |||| ||  
             g UACGGGAAAA  AUAACGUGA gauu cu u
uuggagacggucg u          UU         C    a  c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AZIM01005047.1: 55733-55810 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oha-mir-130a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-130a-5p

Accession MIMAT0036687
Description Ophiophagus hannah oha-miR-130a-5p mature miRNA
Sequence 4 - UGCCCUUUUUCUGUUGUACU - 23
Evidence not_experimental

Mature oha-miR-130a-3p

Accession MIMAT0036688
Description Ophiophagus hannah oha-miR-130a-3p mature miRNA
Sequence 42 - CAGUGCAAUAUUAAAAGGGCAU - 63
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656