miRBase entry: oha-mir-130b

Stem-loop oha-mir-130b


Accession
MI0031336
Description
Ophiophagus hannah oha-mir-130b precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

uguccguccacUGCCCUUUUUAUGUUGUACUAcuagugaacaugcacaaaaagCAGUGCAAUGUUAAAAGGGCAUuggcuggu
...(((.(((.(((((((((.((((((((((.((.(((......)))....)).)))))))))).))))))))).))).))).

Structure
ugu   u   c         U          A  ---a   aa 
   ccg cca UGCCCUUUU AUGUUGUACU cu    gug  c
   ||| ||| ||||||||| |||||||||| ||    |||   
   ggu ggu ACGGGAAAA UGUAACGUGA ga    cac  a
--u   c   U         U          C  aaaa   gu 


Annotation confidence Not enough data
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Genome context
AZIM01007303.1: 15846-15928 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oha-mir-130b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-130b-5p

Accession MIMAT0036689
Description Ophiophagus hannah oha-miR-130b-5p mature miRNA
Sequence 12 - UGCCCUUUUUAUGUUGUACUA - 32
Evidence not_experimental

Mature oha-miR-130b-3p

Accession MIMAT0036690
Description Ophiophagus hannah oha-miR-130b-3p mature miRNA
Sequence 54 - CAGUGCAAUGUUAAAAGGGCAU - 75
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656