miRBase entry: oha-mir-143

Stem-loop oha-mir-143


Accession
MI0031356
Description
Ophiophagus hannah oha-mir-143 precursor miRNA
Gene family
MIPF0000094; mir-143


Sequence

cccaAGGUGCAGUGCUGCAUCUCUGGUcaguugugagucUGAGAUGAAGCACUGUAGCUCAggaaggg
((..((.(((((((((.((((((.(((((....))).)).)))))).))))))))).))..)).....

Structure
-----  ca  G         G      U  -   g 
     cc  AG UGCAGUGCU CAUCUC GG Uca u
     ||  || ||||||||| |||||| || |||  
     gg  UC AUGUCACGA GUAGAG cu agu u
gggaa  AC  G         A      U  g   g 


Annotation confidence Not enough data
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Genome context
AZIM01000254.1: 119771-119838 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oha-mir-143
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-143-5p

Accession MIMAT0036723
Description Ophiophagus hannah oha-miR-143-5p mature miRNA
Sequence 5 - AGGUGCAGUGCUGCAUCUCUGGU - 27
Evidence not_experimental

Mature oha-miR-143-3p

Accession MIMAT0036724
Description Ophiophagus hannah oha-miR-143-3p mature miRNA
Sequence 40 - UGAGAUGAAGCACUGUAGCUCA - 61
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656