miRBase entry: oha-mir-221

Stem-loop oha-mir-221

Accession

MI0031426

Description

Ophiophagus hannah oha-mir-221 precursor miRNA

Gene family

MIPF0000051; mir-221

Sequence

gaugauccagcuuuugggccuucACCUGGCAUACAAUGUAGAAUACUGUguuuguuaagcaacAGCUACAUUGUCUGCUGGGUUUCaggcugucuggaaguaca
.....(((((......(((((..((((((((.(((((((((....((((((((...)))).))))))))))))).))))))))...)))))..)))))......

Structure

-gauga     cuuuug     -uc        U         AAUA    -    g 
      uccag      ggccu   ACCUGGCA ACAAUGUAG    CUGU guuu  
      |||||      |||||   |||||||| |||||||||    |||| |||| u
      agguc      ucgga   UGGGUCGU UGUUACAUC    GAca cgaa  
acauga     ----ug     CUU        C         ----    a    u

Annotation confidence Not enough data

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Genome context

AZIM01002126.1: 54879-54982 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-mir-221

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-221-5p

Accession	MIMAT0036846
Description	Ophiophagus hannah oha-miR-221-5p mature miRNA
Sequence	24 - ACCUGGCAUACAAUGUAGAAUACUGU - 49
Evidence	not_experimental

Mature oha-miR-221-3p

Accession	MIMAT0036847
Description	Ophiophagus hannah oha-miR-221-3p mature miRNA
Sequence	64 - AGCUACAUUGUCUGCUGGGUUUC - 86
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656