miRBase entry: oha-mir-2970

Stem-loop oha-mir-2970

Accession

MI0031439

Description

Ophiophagus hannah oha-mir-2970 precursor miRNA

Gene family

MIPF0001328; mir-2970

Sequence

aucacugcuGACAGUCAGUAGUUGGUCUGGgguaagcaggaaaucUCAGAUCAUCUCUUGACUGUGgaugguguaggggaauu
..(((((.(.((((((((.((.(((((((((((.........))))))))))).)).)))))))).).)))))..........

Structure

--------au     c G        U  U           aag 
          cacug u ACAGUCAG AG UGGUCUGGggu   c
          ||||| | |||||||| || |||||||||||   a
          guggu g UGUCAGUU UC ACUAGACUcua   g
uuaaggggau     a G        C  U           aag

Annotation confidence Not enough data

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Genome context

AZIM01001838.1: 342227-342309 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oha-mir-2970

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-2970-5p

Accession	MIMAT0036869
Description	Ophiophagus hannah oha-miR-2970-5p mature miRNA
Sequence	10 - GACAGUCAGUAGUUGGUCUGG - 30
Evidence	not_experimental

Mature oha-miR-2970-3p

Accession	MIMAT0036870
Description	Ophiophagus hannah oha-miR-2970-3p mature miRNA
Sequence	46 - UCAGAUCAUCUCUUGACUGUG - 66
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656