miRBase entry: oha-mir-29a-1

Stem-loop oha-mir-29a-1

Accession

MI0031443

Description

Ophiophagus hannah oha-mir-29a-1 precursor miRNA

Gene family

MIPF0000009; mir-29

Sequence

gugaccccuuuaaaggauAACUGAUUUCUUCUGGUGUUcggagucuauucuucuuucUAGCACCAUUUGAAAUCGGUUAuagugauuggggaaugu
....((((........((((((((((((...(((((((.((((...........)))))))))))...)))))))))))).......)))).....

Structure

-guga    uuuaaagg            UUC       c    ucua 
     cccc        auAACUGAUUUC   UGGUGUU ggag    u
     ||||        ||||||||||||   ||||||| ||||    u
     gggg        uAUUGGCUAAAG   ACCACGA Ucuu    c
uguaa    -uuaguga            UUU       -    ucuu

Annotation confidence Not enough data

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Genome context

AZIM01006006.1: 37751-37846 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-mir-29a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-29a-1-5p

Accession	MIMAT0036876
Description	Ophiophagus hannah oha-miR-29a-1-5p mature miRNA
Sequence	19 - AACUGAUUUCUUCUGGUGUU - 38
Evidence	not_experimental

Mature oha-miR-29a-3p

Accession	MIMAT0036877
Description	Ophiophagus hannah oha-miR-29a-3p mature miRNA
Sequence	58 - UAGCACCAUUUGAAAUCGGUUA - 79
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656