miRBase entry: oha-mir-301b

Stem-loop oha-mir-301b


Accession
MI0031447
Description
Ophiophagus hannah oha-mir-301b precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

gccacugcuggaaccgccgGCUCUGACAAUAUUGCACUACUguuuaucucaaauuuagCAGUGCAAUAAUAUUGUCAAAGCAUuugguuccaguucuga
..((..((((((((((...(((.(((((((((((((((.(((.............))).))))))...))))))))).)))...))))))))))..)).

Structure
gc  cu          ccg   C         ---      A   uuuau 
  ca  gcuggaaccg   GCU UGACAAUAU   UGCACU CUg     c
  ||  ||||||||||   ||| |||||||||   |||||| |||     u
  gu  ugaccuuggu   CGA ACUGUUAUA   ACGUGA gau     c
-a  cu          uUA   A         AUA      C   uuaaa 


Annotation confidence Not enough data
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Genome context
AZIM01005047.1: 53445-53543 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oha-mir-301b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-301b-5p

Accession MIMAT0036882
Description Ophiophagus hannah oha-miR-301b-5p mature miRNA
Sequence 20 - GCUCUGACAAUAUUGCACUACU - 41
Evidence not_experimental

Mature oha-miR-301b-3p

Accession MIMAT0036883
Description Ophiophagus hannah oha-miR-301b-3p mature miRNA
Sequence 59 - CAGUGCAAUAAUAUUGUCAAAGCAU - 83
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656